Large-scale genome-wide association studies consortia: blessing, burden, or necessity?
نویسنده
چکیده
In the current issue of Circulation: Cardiovascular Genetics, Preuss and colleagues1 describe the design of the Coronary ARtery DIsease Genome-wide Replication And Meta-Analysis (CARDIoGRAM) consortium. CARDIoGRAM is one of several consortia that have formed in the past few years in order to combine data from different genome-wide association studies (GWAS) in large-scale metaanalyses. Many of these consortia have focused their efforts on traits from the cardiovascular and type 2 diabetes domains. In addition to CARDIoGRAM, other examples of trait-specific consortia in this field include the Meta-Analysis of Glucose and InsulinRelated Traits Consortium,2 the Global Lipids Genetics Consortium,3 the Diabetes Genetics Replication and Metaanalysis consortium,4 and the Genetic Investigation of Anthropometric Traits5 consortium. There are also examples of consortia that have a wider scope, with phenotypes ranging over the whole cardiovascular field, such as the Cohorts for Heart and Aging Research in Genomic Epidemiology (http:// web.chargeconsortium.com/), European Network of Genomic and Genetic Epidemiology (http://www.euengage.org/), and Candidate Gene Association Resource6 consortia. The largescale GWAS consortia have many things in common, such as: (1) rigorous and robust methods with greater statistical power than single-center studies, as exemplified in the current article from the CARDIoGRAM consortium; (2) researchers being involved in several consortia, leading to cross-fertilization, quicker development and implementation of new methods; and (3) study samples being used for different traits in different consortia for increased cost-effectiveness.
منابع مشابه
Research guidelines in the era of large-scale collaborations: an analysis of Genome-wide Association Study Consortia.
Scientific research has shifted from studies conducted by single investigators to the creation of large consortia. Genetic epidemiologists, for example, now collaborate extensively for genome-wide association studies (GWAS). The effect has been a stream of confirmed disease-gene associations. However, effects on human subjects oversight, data-sharing, publication and authorship practices, resea...
متن کاملDesign of Prospective Meta-Analyses of Genome-Wide Association Studies From 5 Cohorts
Background—The primary aim of genome-wide association studies is to identify novel genetic loci associated with interindividual variation in the levels of risk factors, the degree of subclinical disease, or the risk of clinical disease. The requirement for large sample sizes and the importance of replication have served as powerful incentives for scientific collaboration. Methods—The Cohorts fo...
متن کاملGenome Wide Association Studies, Next Generation Sequencing and Their Application in Animal Breeding and Genetics: A Review
Recently genetic studies have been revolutionized by next generation sequencing (NGS) technology, and it is expected that the use of this technology will largely eliminate defects in the methods of association studies. The NGS technology is becoming the premier tool in genetics. However, at the moment the use of this method is limited especially in the livestock due to high cost and computation...
متن کاملP83: Role of Neuregulin 3 Genes Expression on Attention Deficits in Schizophrenia
Genetic epidemiological studies strongly suggest that additive and interactive genes, each with small effects, mediate the genetic vulnerability for schizophrenia. With the human genome working draft at hand, candidate gene (and ultimately large-scale genome-wide) association studies are gaining renewed interest in the effort to unravel the complex genetics of schizophrenia. Linkage and fine ma...
متن کاملThe Pattern of Linkage Disequilibrium in Livestock Genome
Linkage disequilibrium (LD) is bases of genomic selection, genomic marker imputation, marker assisted selection (MAS), quantitative trait loci (QTL) mapping, parentage testing and whole genome association studies. The Particular alleles at closed loci have a tendency to be co-inherited. In linked loci this pattern leads to association between alleles in population which is known as LD. Two metr...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- Circulation. Cardiovascular genetics
دوره 3 5 شماره
صفحات -
تاریخ انتشار 2010